Package: invasible 1.0.0
invasible: Predicting Invasion Probabilities from Phylogenetic Data and Species Traits
A phylogenetic modelling approach for predicting species invasion risk, out of a given pool of local species where a subset is known to be invasive elsewhere. The package uses phylogenetic signal estimation and phylogenetic linear and logistic models to estimate probabilities of being invasive based on phylogeny and any set of additional predictors. A ranking method is implemented to evaluate prioritisation strategies. A manuscript describing these methods, by Shahar Dubiner and Tamar Guy-Haim, is in preparation.
Authors:
invasible_1.0.0.tar.gz
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invasible_1.0.0.tgz(r-4.6-any)invasible_1.0.0.tgz(r-4.5-any)
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invasible_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
invasible/json (API)
| # Install 'invasible' in R: |
| install.packages('invasible', repos = c('https://shadub.r-universe.dev', 'https://cloud.r-project.org')) |
- fish_beginning_with_E - Fish dataset with invasive status
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:f04b6b8037. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 138 | ||
| source / vignettes | OK | 243 | ||
| linux-release | OK | 994 | ||
| macos-release | OK | 133 | ||
| macos-oldrel | OK | 228 | ||
| windows-devel | OK | 105 | ||
| windows-release | OK | 78 | ||
| windows-oldrel | OK | 63 | ||
| wasm-release | OK | 141 |
Exports:invasion_signalmonitor_speciespredict_invasibleprepare_invasible
Dependencies:apeaskpassbootcapercliclusterGenerationcodacodetoolscombinatcpp11crayoncurldeldirDEoptimdigestdoParalleldplyrexpmfarverfastmatchforeachfuturefuture.applygenericsggplot2globalsgluegridExtragtablehmshttrigraphinterpisobanditeratorsjpegjsonlitelabelinglatticelatticeExtralifecyclelistenvlme4magrittrmapsMASSMatrixmimeminqamnormtmvtnormnlmenloptrnumDerivopenssloptimParallelparallellyphangornphylolmphyrphytoolspillarpkgconfigpngprettyunitspROCprogresspurrrquadprogR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrentrezrlangrnclrotlS7scalesscatterplot3dstringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithrXML
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fish dataset with invasive status | fish_beginning_with_E |
| Compute phylogenetic signal and baseline invasion model | invasion_signal |
| Simulated monitoring performance for predicted invaders | monitor_species |
| Predict invasion risk and evaluate model performance | predict_invasible |
| Prepare data and phylogeny for analyses (mandatory step) | prepare_invasible |