{
  "_id": "6ac7d7bfde46216d5edd36fc",
  "Package": "invasible",
  "Title": "Predicting Invasion Probabilities from Phylogenetic Data and\nSpecies Traits",
  "Version": "1.0.0",
  "Authors@R": "person(\"Shahar\", \"Dubiner\", email=\"dubiner@mail.tau.ac.il\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0003-1771-0087\"))",
  "Description": "A phylogenetic modelling approach for predicting species\ninvasion risk, out of a given pool of local species where a\nsubset is known to be invasive elsewhere. The package uses\nphylogenetic signal estimation and phylogenetic linear and\nlogistic models to estimate probabilities of being invasive\nbased on phylogeny and any set of additional predictors. A\nranking method is implemented to evaluate prioritisation\nstrategies. A manuscript describing these methods, by Shahar\nDubiner and Tamar Guy-Haim, is in preparation.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-08 17:32:27 UTC",
    "User": "root"
  },
  "Author": "Shahar Dubiner [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-1771-0087>)",
  "Maintainer": "Shahar Dubiner <dubiner@mail.tau.ac.il>",
  "LazyData": "true",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libjpeg-dev\nlibpng-dev libxml2-dev libssl-dev",
  "Repository": "https://shadub.r-universe.dev",
  "Date/Publication": "2026-10-08 16:39:02 UTC",
  "RemoteUrl": "https://github.com/cran/invasible",
  "RemoteRef": "HEAD",
  "RemoteSha": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
  "_user": "shadub",
  "_type": "src",
  "_file": "invasible_1.0.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/e89fdf7c35855544efdb1126d88da6507aeccd11333c17ac365f86e0d66b45f8",
  "_filesize": 109210,
  "_sha256": "e89fdf7c35855544efdb1126d88da6507aeccd11333c17ac365f86e0d66b45f8",
  "_expires": "2027-01-16T17:49:48.000Z",
  "_created": "2026-10-08T17:32:27.000Z",
  "_published": "2026-10-08T17:49:51.011Z",
  "_buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 113449418230,
      "time": 138,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11568001538"
    },
    {
      "job": 113449418373,
      "time": 994,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11567889314"
    },
    {
      "job": 113449418378,
      "time": 228,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11567678566"
    },
    {
      "job": 113449418197,
      "time": 133,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11567254045"
    },
    {
      "job": 113447607488,
      "time": 243,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11568335245"
    },
    {
      "job": 113449418265,
      "time": 141,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11567079752"
    },
    {
      "job": 113449418368,
      "time": 105,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11568475404"
    },
    {
      "job": 113449418290,
      "time": 63,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11567562975"
    },
    {
      "job": 113449418245,
      "time": 78,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11567647782"
    }
  ],
  "_upstream": "https://github.com/cran/invasible",
  "_commit": {
    "id": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
    "author": "Shahar Dubiner <dubiner@mail.tau.ac.il>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.0\n",
    "time": 1791477542
  },
  "_maintainer": {
    "name": "Shahar Dubiner",
    "email": "dubiner@mail.tau.ac.il",
    "login": "shadub",
    "description": "",
    "uuid": 258340093,
    "orcid": "0000-0003-1771-0087"
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "caper",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "phylolm",
      "role": "Imports"
    },
    {
      "package": "phyr",
      "role": "Imports"
    },
    {
      "package": "phytools",
      "role": "Imports"
    },
    {
      "package": "pROC",
      "role": "Imports"
    },
    {
      "package": "rotl",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-30",
      "n": 1
    },
    {
      "week": "2026-32",
      "n": 1
    },
    {
      "week": "2026-41",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.0",
      "date": "2026-07-21"
    },
    {
      "name": "0.1.1",
      "date": "2026-08-05"
    },
    {
      "name": "1.0.0",
      "date": "2026-10-08"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "shadub",
      "count": 3,
      "uuid": 258340093
    }
  ],
  "_userbio": {
    "uuid": 258340093,
    "type": "user",
    "name": "shadub",
    "followers": 0
  },
  "_downloads": {
    "count": 240,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/invasible"
  },
  "_searchresults": 0,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/invasible.html",
    "extra/manual.pdf"
  ],
  "_realowner": "shadub",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2026-07-21"
    },
    {
      "version": "0.1.1",
      "date": "2026-08-05"
    }
  ],
  "_exports": [
    "invasion_signal",
    "monitor_species",
    "predict_invasible",
    "prepare_invasible"
  ],
  "_datasets": [
    {
      "name": "fish_beginning_with_E",
      "title": "Fish dataset with invasive status",
      "object": "fish_beginning_with_E",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Species",
        "Invasive",
        "Fake_categorical_trait",
        "Fake_continuous_trait"
      ],
      "rows": 23,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "fish_beginning_with_E",
      "title": "Fish dataset with invasive status",
      "topics": [
        "fish_beginning_with_E"
      ]
    },
    {
      "page": "invasion_signal",
      "title": "Compute phylogenetic signal and baseline invasion model",
      "topics": [
        "invasion_signal"
      ]
    },
    {
      "page": "monitor_species",
      "title": "Simulated monitoring performance for predicted invaders",
      "topics": [
        "monitor_species"
      ]
    },
    {
      "page": "predict_invasible",
      "title": "Predict invasion risk and evaluate model performance",
      "topics": [
        "predict_invasible"
      ]
    },
    {
      "page": "prepare_invasible",
      "title": "Prepare data and phylogeny for analyses (mandatory step)",
      "topics": [
        "prepare_invasible"
      ]
    }
  ],
  "_rundeps": [
    "ape",
    "askpass",
    "boot",
    "caper",
    "cli",
    "clusterGeneration",
    "coda",
    "codetools",
    "combinat",
    "cpp11",
    "crayon",
    "curl",
    "deldir",
    "DEoptim",
    "digest",
    "doParallel",
    "dplyr",
    "expm",
    "farver",
    "fastmatch",
    "foreach",
    "future",
    "future.apply",
    "generics",
    "ggplot2",
    "globals",
    "glue",
    "gridExtra",
    "gtable",
    "hms",
    "httr",
    "igraph",
    "interp",
    "isoband",
    "iterators",
    "jpeg",
    "jsonlite",
    "labeling",
    "lattice",
    "latticeExtra",
    "lifecycle",
    "listenv",
    "lme4",
    "magrittr",
    "maps",
    "MASS",
    "Matrix",
    "mime",
    "minqa",
    "mnormt",
    "mvtnorm",
    "nlme",
    "nloptr",
    "numDeriv",
    "openssl",
    "optimParallel",
    "parallelly",
    "phangorn",
    "phylolm",
    "phyr",
    "phytools",
    "pillar",
    "pkgconfig",
    "png",
    "prettyunits",
    "pROC",
    "progress",
    "purrr",
    "quadprog",
    "R6",
    "rbibutils",
    "RColorBrewer",
    "Rcpp",
    "RcppArmadillo",
    "RcppEigen",
    "Rdpack",
    "reformulas",
    "rentrez",
    "rlang",
    "rncl",
    "rotl",
    "S7",
    "scales",
    "scatterplot3d",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "XML"
  ],
  "_score": 1.4771212547196624,
  "_indexed": true,
  "_nocasepkg": "invasible",
  "_universes": [
    "shadub"
  ],
  "_previous": "0.1.1",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-08T17:34:45.000Z",
      "distro": "resolute",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/dd549cdc9b286f9028d6db65b6a87636f6a83aa35ce40a471dd33802219e571a",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.0.0",
      "date": "2026-10-08T17:46:40.000Z",
      "distro": "resolute",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/0e8b2936ef2069495fc3381e303b7d1c64200a1498c7905cfe9a309c62fefb0f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-08T17:42:43.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/dca257937efdf5cecc0296dcded503cbd2c737a0a392f4853700ed0b6d5d9b7d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.0.0",
      "date": "2026-10-08T17:37:54.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/7c028fc7c34db19948049171a5bd803835164458919c6726a6c234d6c5cde8db",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.0",
      "date": "2026-10-08T17:35:06.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/b7a2041b41d6a7262b42ca9dabe6c7c74aa20aafb0c27fb4ad016d35630e534c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-08T17:34:01.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/91b2319e45b6dccd3337f6fb06b998d6c878a2d9f0da466b4cc31a7466f23379",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-08T17:33:32.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/54ab8195a9f795abc4ffbf58db95d142ee19cc149502b19b82977850a97dbdbd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.0.0",
      "date": "2026-10-08T17:33:39.000Z",
      "commit": "f04b6b8037691d6b4a09f71157b4870b1d3d114c",
      "fileid": "https://r2.ropensci.org/6419417ffa26653e2efd695c1c644620acd0ad71c36e834f29661abf2cf81706",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/shadub/actions/runs/37816819802"
    }
  ]
}